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Bioinformatics
Explore questions in the Bioinformatics category that you can ask Spark.E!
- Bridge amplification and cluster generation are associated with which sequencing platform(s)?
- Would the quality of the data below be considered high or low?
- Which of the following sequencing platforms we discussed in class produces the shortest reads?
- How many lines would a fastq file containing information for 1,000,000 reads contain?
- Given a Phred quality score (Q) of 10 for a particular base of a sequencing read, what is the probability that the base was called incorrectly?
- What software was used in class to assess next-gen sequencing data quality?
- What software was used in class to map reads to a reference genome?
- Which of the following techniques is used to copy/amplify fragments of DNA?
- Sanger sequencing is no longer used to sequence DNA.
- What keyboard key is used to autofill the name of a file or directory within the terminal?
- What keyboard keys are used to scroll through the command history in the terminal?
- What unix command that we covered in class likely generated the output shown in the terminal below (there is more than one correct answer)? (image of genome sequence)
- Which of the following is not an example of an omics application?
- What unix command is used to make a new directory?
- What unix command likely generated the output shown in the terminal below?
- What unix command is used to change the working directory in the terminal?
- Which of the following symbols is commonly used to flag command options?
- What software was used in class to view sequence traces/chromatograms (there is more than one correct answer)?
- Of the following two alignments, which is more likely to have been generated by software that does global sequence alignment?
- What symbols are used to redirect output from a command from the terminal to a file?